HL_5DGE_220
3D structure
- PDB id
- 5DGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 5DGE|1|6|G|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGE_220 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.1465
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5DGE|1|6|G|1594
5DGE|1|6|U|1595
5DGE|1|6|C|1596
5DGE|1|6|A|1597
5DGE|1|6|U|1598
5DGE|1|6|C|1599
5DGE|1|6|A|1600
5DGE|1|6|G|1601
5DGE|1|6|C|1602
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
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