HL_5DGE_238

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UCGACCCUUUGGAAGA

Length

16 nucleotides

Bulged bases

5DGE|1|6|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|6|U|185
5DGE|1|6|C|186
5DGE|1|6|G|187
5DGE|1|6|A|188
5DGE|1|6|C|189
5DGE|1|6|C|190
5DGE|1|6|C|191
5DGE|1|6|U|192
5DGE|1|6|U|193
5DGE|1|6|U|194
5DGE|1|6|G|195
5DGE|1|6|G|196
5DGE|1|6|A|197
5DGE|1|6|A|198
5DGE|1|6|G|199
5DGE|1|6|A|200

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s8

40S ribosomal protein S8-A