HL_5DGF_053

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAUUCAUUUUCC

Length

14 nucleotides

Bulged bases

5DGF|1|1|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGF|1|1|G|2533
5DGF|1|1|G|2534
5DGF|1|1|A|2535
5DGF|1|1|A|2536
5DGF|1|1|U|2537
5DGF|1|1|U|2538
5DGF|1|1|C|2539
5DGF|1|1|A|2540
5DGF|1|1|U|2541
5DGF|1|1|U|2542
5DGF|1|1|U|2543
5DGF|1|1|U|2544
5DGF|1|1|C|2545
5DGF|1|1|C|2546

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain L8

60S ribosomal protein L8-A

Chain O4

60S ribosomal protein L34-A

Chain S1

40S ribosomal protein S1-A