HL_5DGF_149
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUGAUUUUAUGCAGG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGF_149 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.2506
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
5DGF|1|5|C|1562
5DGF|1|5|C|1563
5DGF|1|5|U|1564
5DGF|1|5|G|1565
5DGF|1|5|A|1566
5DGF|1|5|U|1567
5DGF|1|5|U|1568
5DGF|1|5|U|1569
5DGF|1|5|U|1570
5DGF|1|5|A|1571
5DGF|1|5|U|1572
5DGF|1|5|G|1573
5DGF|1|5|C|1574
5DGF|1|5|A|1575
5DGF|1|5|G|1576
5DGF|1|5|G|1577
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l8
- 60S ribosomal protein L8-A
- Chain n5
- 60S ribosomal protein L25
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