HL_5DGF_184

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

5DGF|1|5|U|3195, 5DGF|1|5|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGF_184 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2674

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5DGF|1|5|C|3193
5DGF|1|5|C|3194
5DGF|1|5|U|3195
5DGF|1|5|U|3196
5DGF|1|5|G|3197
5DGF|1|5|U|3198
5DGF|1|5|G|3199

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l9

60S ribosomal protein L9-A

Chain m4

60S ribosomal protein L14-A

Chain m6

60S ribosomal protein L16-A