HL_5DGF_200

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACAGGGCCCAUUCGGGUCUUGU

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGF_200 not in the Motif Atlas

Homologous match to HL_8P9A_202

Geometric discrepancy: 0.2697

The information below is about HL_8P9A_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGF|1|6|A|483
5DGF|1|6|C|484
5DGF|1|6|A|485
5DGF|1|6|G|486
5DGF|1|6|G|487
5DGF|1|6|G|488
5DGF|1|6|C|489
5DGF|1|6|C|490
5DGF|1|6|C|491
5DGF|1|6|A|492
5DGF|1|6|U|493
5DGF|1|6|U|494
5DGF|1|6|C|495
5DGF|1|6|G|496
5DGF|1|6|G|497
5DGF|1|6|G|498
5DGF|1|6|U|499
5DGF|1|6|C|500
5DGF|1|6|U|501
5DGF|1|6|U|502
5DGF|1|6|G|503
5DGF|1|6|U|504

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A