HL_5DGV_005

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

5DGV|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.0566

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5DGV|1|1|U|194
5DGV|1|1|U|195
5DGV|1|1|G|196
5DGV|1|1|G|197
5DGV|1|1|A|198
5DGV|1|1|A|199
5DGV|1|1|C|200
5DGV|1|1|A|201

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N6

60S ribosomal protein L26-A

Chain O2

60S ribosomal protein L32