HL_5DGV_053

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAUUCAUUUUCC

Length

14 nucleotides

Bulged bases

5DGV|1|1|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|1|G|2533
5DGV|1|1|G|2534
5DGV|1|1|A|2535
5DGV|1|1|A|2536
5DGV|1|1|U|2537
5DGV|1|1|U|2538
5DGV|1|1|C|2539
5DGV|1|1|A|2540
5DGV|1|1|U|2541
5DGV|1|1|U|2542
5DGV|1|1|U|2543
5DGV|1|1|U|2544
5DGV|1|1|C|2545
5DGV|1|1|C|2546

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain L8

60S ribosomal protein L8-A (eL8)

Chain S1

40S ribosomal protein S1-A