HL_5DGV_058
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_058 not in the Motif Atlas
- Homologous match to HL_5TBW_057
- Geometric discrepancy: 0.0529
- The information below is about HL_5TBW_057
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
5DGV|1|1|C|2693
5DGV|1|1|A|2694
5DGV|1|1|A|2695
5DGV|1|1|A|2696
5DGV|1|1|A|2697
5DGV|1|1|G|2698
5DGV|1|1|G|2699
5DGV|1|1|G|2700
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M0
- 60S ribosomal protein L10
- Chain N1
- 60S ribosomal protein L21-A
- Chain Q2
- 60S ribosomal protein L42-A
- Chain SM
- Suppressor protein STM1
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