HL_5DGV_088

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5DGV|1|2|U|719, 5DGV|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|2|G|703
5DGV|1|2|C|704
5DGV|1|2|U|705
5DGV|1|2|A|706
5DGV|1|2|A|707
5DGV|1|2|C|708
5DGV|1|2|C|709
5DGV|1|2|U|710
5DGV|1|2|U|711
5DGV|1|2|G|712
5DGV|1|2|A|713
5DGV|1|2|G|714
5DGV|1|2|U|715
5DGV|1|2|C|716
5DGV|1|2|C|717
5DGV|1|2|U|718
5DGV|1|2|U|719
5DGV|1|2|G|720
5DGV|1|2|U|721
5DGV|1|2|G|722
5DGV|1|2|G|723
5DGV|1|2|C|724
5DGV|1|2|U|725
5DGV|1|2|C|726
5DGV|1|2|U|727
5DGV|1|2|U|728
5DGV|1|2|G|729
5DGV|1|2|G|730
5DGV|1|2|C|731
5DGV|1|2|G|732
5DGV|1|2|A|733
5DGV|1|2|A|734
5DGV|1|2|C|735

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain S4

40S ribosomal protein S4-A