HL_5DGV_122
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 5DGV|1|5|G|304, 5DGV|1|5|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_122 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.0803
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5DGV|1|5|G|303
5DGV|1|5|G|304
5DGV|1|5|U|305
5DGV|1|5|A|306
5DGV|1|5|A|307
5DGV|1|5|A|308
5DGV|1|5|U|309
5DGV|1|5|U|310
5DGV|1|5|C|311
5DGV|1|5|C|312
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain n8
- 60S ribosomal protein L28
- Chain o6
- 60S ribosomal protein L36-A
- Chain q2
- 60S ribosomal protein L42-A
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