HL_5DGV_125

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

5DGV|1|5|U|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_125 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.2908

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5DGV|1|5|C|543
5DGV|1|5|C|544
5DGV|1|5|U|545
5DGV|1|5|C|546
5DGV|1|5|G|547
5DGV|1|5|G|548

Current chains

Chain 5

25S ribosomal RNA

Nearby chains