HL_5DGV_153

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

5DGV|1|5|C|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_153 not in the Motif Atlas

Homologous match to HL_5TBW_040

Geometric discrepancy: 0.0918

The information below is about HL_5TBW_040

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

5DGV|1|5|C|1792
5DGV|1|5|C|1793
5DGV|1|5|G|1794
5DGV|1|5|U|1795
5DGV|1|5|G|1796

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain q3

60S ribosomal protein L43-A