HL_5DGV_165

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGAGACGUUUCUUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|5|G|2437
5DGV|1|5|A|2438
5DGV|1|5|A|2439
5DGV|1|5|G|2440
5DGV|1|5|A|2441
5DGV|1|5|G|2442
5DGV|1|5|A|2443
5DGV|1|5|C|2444
5DGV|1|5|G|2503
5DGV|1|5|U|2504
5DGV|1|5|U|2505
5DGV|1|5|U|2506
5DGV|1|5|C|2507
5DGV|1|5|U|2508
5DGV|1|5|U|2509
5DGV|1|5|U|2510

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l8

60S ribosomal protein L8-A (eL8)

Chain o6

60S ribosomal protein L36-A

Chain s1

40S ribosomal protein S1-A