HL_5DGV_182

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

5DGV|1|5|U|3195, 5DGV|1|5|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_182 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2487

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5DGV|1|5|C|3193
5DGV|1|5|C|3194
5DGV|1|5|U|3195
5DGV|1|5|U|3196
5DGV|1|5|G|3197
5DGV|1|5|U|3198
5DGV|1|5|G|3199

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l9

60S ribosomal protein L9-A

Chain m4

60S ribosomal protein L14-A

Chain m6

60S ribosomal protein L16-A