HL_5DGV_196

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5DGV|1|6|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_196 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.0935

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5DGV|1|6|C|414
5DGV|1|6|C|415
5DGV|1|6|A|416
5DGV|1|6|A|417
5DGV|1|6|G|418
5DGV|1|6|G|419

Current chains

Chain 6

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain n3

60S ribosomal protein L23-A

Chain s6

40S ribosomal protein S6-A