HL_5DGV_198
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACAGGGCCCAUUCGGGUCUUGU
- Length
- 22 nucleotides
- Bulged bases
- 5DGV|1|6|U|493, 5DGV|1|6|U|494, 5DGV|1|6|C|495
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_198 not in the Motif Atlas
- Homologous match to HL_8P9A_202
- Geometric discrepancy: 0.2416
- The information below is about HL_8P9A_202
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGV|1|6|A|483
5DGV|1|6|C|484
5DGV|1|6|A|485
5DGV|1|6|G|486
5DGV|1|6|G|487
5DGV|1|6|G|488
5DGV|1|6|C|489
5DGV|1|6|C|490
5DGV|1|6|C|491
5DGV|1|6|A|492
5DGV|1|6|U|493
5DGV|1|6|U|494
5DGV|1|6|C|495
5DGV|1|6|G|496
5DGV|1|6|G|497
5DGV|1|6|G|498
5DGV|1|6|U|499
5DGV|1|6|C|500
5DGV|1|6|U|501
5DGV|1|6|U|502
5DGV|1|6|G|503
5DGV|1|6|U|504
Current chains
- Chain 6
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain e0
- 40S ribosomal protein S30-A
- Chain s9
- 40S ribosomal protein S9-A
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