HL_5DGV_201

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCCGAUUUUUUCGUAC

Length

17 nucleotides

Bulged bases

5DGV|1|6|G|660, 5DGV|1|6|U|667

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_201 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.326

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5DGV|1|6|G|656
5DGV|1|6|U|657
5DGV|1|6|C|658
5DGV|1|6|C|659
5DGV|1|6|G|660
5DGV|1|6|A|661
5DGV|1|6|U|662
5DGV|1|6|U|663
5DGV|1|6|U|664
5DGV|1|6|U|665
5DGV|1|6|U|666
5DGV|1|6|U|667
5DGV|1|6|C|668
5DGV|1|6|G|669
5DGV|1|6|U|670
5DGV|1|6|A|673
5DGV|1|6|C|674

Current chains

Chain 6

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain d1

40S ribosomal protein S21-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A