HL_5DGV_202

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCCUUGUGG

Length

9 nucleotides

Bulged bases

5DGV|1|6|U|718, 5DGV|1|6|U|719

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_202 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.161

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

5DGV|1|6|U|715
5DGV|1|6|C|716
5DGV|1|6|C|717
5DGV|1|6|U|718
5DGV|1|6|U|719
5DGV|1|6|G|720
5DGV|1|6|U|721
5DGV|1|6|G|722
5DGV|1|6|G|723

Current chains

Chain 6

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains