HL_5DGV_239

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAGAGAAGGGGGCAACUCCAUCUCAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|6|U|1688
5DGV|1|6|A|1689
5DGV|1|6|G|1690
5DGV|1|6|A|1691
5DGV|1|6|G|1692
5DGV|1|6|A|1693
5DGV|1|6|A|1694
5DGV|1|6|G|1695
5DGV|1|6|G|1696
5DGV|1|6|G|1697
5DGV|1|6|G|1698
5DGV|1|6|G|1699
5DGV|1|6|C|1700
5DGV|1|6|A|1701
5DGV|1|6|A|1702
5DGV|1|6|C|1703
5DGV|1|6|U|1704
5DGV|1|6|C|1705
5DGV|1|6|C|1706
5DGV|1|6|A|1707
5DGV|1|6|U|1708
5DGV|1|6|C|1709
5DGV|1|6|U|1710
5DGV|1|6|C|1711
5DGV|1|6|A|1712
5DGV|1|6|G|1713

Current chains

Chain 6

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A