HL_5DH6_002
3D structure
- PDB id
- 5DH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mg2+
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.78 Å
Loop
- Sequence
- CUGGGAUG
- Length
- 8 nucleotides
- Bulged bases
- 5DH6|1|A|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5DH6|1|A|C|27
5DH6|1|A|U|28
5DH6|1|A|G|29
5DH6|1|A|G|30
5DH6|1|A|G|31
5DH6|1|A|A|32
5DH6|1|A|U|33
5DH6|1|A|G|34
Current chains
- Chain A
- hammerhead ribozyme
Nearby chains
- Chain B
- 5'-R(*GP*GP*GP*CP*GP*U)-D(P*C)-R(P*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3'
Coloring options: