HL_5DM8_006
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAACUGAAACAUCUCAGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5DM8|1|X|A|168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DM8|1|X|G|165|||B
5DM8|1|X|G|165|||C
5DM8|1|X|A|165|||D
5DM8|1|X|A|165|||E
5DM8|1|X|C|165|||F
5DM8|1|X|U|165|||G
5DM8|1|X|G|166
5DM8|1|X|A|167
5DM8|1|X|A|168
5DM8|1|X|A|169
5DM8|1|X|C|170
5DM8|1|X|A|171
5DM8|1|X|U|172
5DM8|1|X|C|173
5DM8|1|X|U|174
5DM8|1|X|C|175
5DM8|1|X|A|176
5DM8|1|X|G|177
5DM8|1|X|U|178
5DM8|1|X|A|179
5DM8|1|X|C|180
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L28
Coloring options: