HL_5DM8_016

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

5DM8|1|X|U|545, 5DM8|1|X|U|546, 5DM8|1|X|A|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_016 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1568

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

5DM8|1|X|C|544
5DM8|1|X|U|545
5DM8|1|X|U|546
5DM8|1|X|A|547
5DM8|1|X|U|548
5DM8|1|X|G|549

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21