HL_5DM8_022
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 5DM8|1|X|U|747, 5DM8|1|X|A|751, 5DM8|1|X|C|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DM8_022 not in the Motif Atlas
- Geometric match to HL_7A0S_022
- Geometric discrepancy: 0.0968
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
5DM8|1|X|U|744
5DM8|1|X|G|745
5DM8|1|X|C|746
5DM8|1|X|U|747
5DM8|1|X|G|748
5DM8|1|X|A|749
5DM8|1|X|A|750
5DM8|1|X|A|751
5DM8|1|X|C|752
5DM8|1|X|A|753
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain B
- 50S ribosomal protein L3
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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