HL_5DM8_036

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAUGGCUAUG

Length

11 nucleotides

Bulged bases

5DM8|1|X|U|1454, 5DM8|1|X|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_036 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.4853

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5DM8|1|X|C|1451
5DM8|1|X|U|1452
5DM8|1|X|A|1453
5DM8|1|X|U|1454
5DM8|1|X|G|1455
5DM8|1|X|G|1456
5DM8|1|X|C|1457
5DM8|1|X|U|1458
5DM8|1|X|A|1459
5DM8|1|X|U|1460
5DM8|1|X|G|1461

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain K

50S ribosomal protein L17