HL_5DM8_038

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

5DM8|1|X|C|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_038 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1254

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5DM8|1|X|C|1533
5DM8|1|X|C|1534
5DM8|1|X|U|1535
5DM8|1|X|C|1536
5DM8|1|X|G|1537
5DM8|1|X|G|1538

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains