HL_5DM8_040

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5DM8|1|X|A|1614, 5DM8|1|X|A|1616, 5DM8|1|X|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_040 not in the Motif Atlas

Geometric match to HL_7A0S_040

Geometric discrepancy: 0.1106

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5DM8|1|X|C|1612
5DM8|1|X|G|1613
5DM8|1|X|A|1614
5DM8|1|X|C|1615
5DM8|1|X|A|1616
5DM8|1|X|C|1617
5DM8|1|X|A|1618
5DM8|1|X|G|1619

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain 2

50S ribosomal protein L34

Chain P

50S ribosomal protein L22