HL_5DM8_051

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUUUGGGG

Length

10 nucleotides

Bulged bases

5DM8|1|X|U|2144, 5DM8|1|X|U|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_051 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3295

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

5DM8|1|X|C|2141
5DM8|1|X|C|2142
5DM8|1|X|U|2143
5DM8|1|X|U|2144
5DM8|1|X|U|2145
5DM8|1|X|U|2146
5DM8|1|X|G|2147
5DM8|1|X|G|2148
5DM8|1|X|G|2149
5DM8|1|X|G|2150

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains