HL_5DM8_052
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AAAAUCACU
- Length
- 9 nucleotides
- Bulged bases
- 5DM8|1|X|A|2212
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DM8_052 not in the Motif Atlas
- Homologous match to HL_7A0S_051
- Geometric discrepancy: 0.4027
- The information below is about HL_7A0S_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38046.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5DM8|1|X|A|2205
5DM8|1|X|A|2210
5DM8|1|X|A|2211
5DM8|1|X|A|2212
5DM8|1|X|U|2213
5DM8|1|X|C|2214
5DM8|1|X|A|2215
5DM8|1|X|C|2216
5DM8|1|X|U|2217
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain U
- 50S ribosomal protein L28
Coloring options: