HL_5DO4_001
3D structure
- PDB id
- 5DO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thrombin-RNA aptamer complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.86 Å
Loop
- Sequence
- (CFZ)(UMS)GAAG
- Length
- 6 nucleotides
- Bulged bases
- 5DO4|1|A|A|14
- QA status
- Modified nucleotides: CFZ, UMS
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Other HL
- Broad Annotation
- Other HL
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5DO4|1|A|CFZ|11
5DO4|1|A|UMS|12
5DO4|1|A|G|13
5DO4|1|A|A|14
5DO4|1|A|A|15
5DO4|1|A|G|16
Current chains
- Chain A
- RNA (25-MER)
Nearby chains
- Chain H
- Thrombin heavy chain
- Chain L
- Thrombin light chain
Coloring options: