HL_5DOX_048
3D structure
- PDB id
- 5DOX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CG(PSU)AAC(5MU)A(PSU)AA(4OC)G
- Length
- 13 nucleotides
- Bulged bases
- 5DOX|1|1A|A|1913, 5DOX|1|1A|C|1914, 5DOX|1|1A|A|1916
- QA status
- Modified nucleotides: PSU, 5MU, 4OC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DOX_048 not in the Motif Atlas
- Homologous match to HL_7RQB_048
- Geometric discrepancy: 0.1016
- The information below is about HL_7RQB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DOX|1|1A|C|1909
5DOX|1|1A|G|1910
5DOX|1|1A|PSU|1911
5DOX|1|1A|A|1912
5DOX|1|1A|A|1913
5DOX|1|1A|C|1914
5DOX|1|1A|5MU|1915
5DOX|1|1A|A|1916
5DOX|1|1A|PSU|1917
5DOX|1|1A|A|1918
5DOX|1|1A|A|1919
5DOX|1|1A|4OC|1920
5DOX|1|1A|G|1921
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1l
- 30S ribosomal protein S12
Coloring options: