HL_5DOX_059

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOX_059 not in the Motif Atlas

Homologous match to HL_7RQB_058

Geometric discrepancy: 0.0713

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5DOX|1|1A|C|2374
5DOX|1|1A|G|2375
5DOX|1|1A|A|2376
5DOX|1|1A|A|2377
5DOX|1|1A|A|2378
5DOX|1|1A|G|2379

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L33

Chain 1S

50S ribosomal protein L18