HL_5DOX_133

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5DOX|1|2A|A|1067, 5DOX|1|2A|G|1068, 5DOX|1|2A|A|1070, 5DOX|1|2A|G|1071, 5DOX|1|2A|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOX|1|2A|C|1064
5DOX|1|2A|U|1065
5DOX|1|2A|U|1066
5DOX|1|2A|A|1067
5DOX|1|2A|G|1068
5DOX|1|2A|A|1069
5DOX|1|2A|A|1070
5DOX|1|2A|G|1071
5DOX|1|2A|C|1072
5DOX|1|2A|A|1073
5DOX|1|2A|G|1074

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25