HL_5DOX_202

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

5DOX|1|2a|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOX_202 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.5769

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOX|1|2a|G|1134
5DOX|1|2a|U|1135
5DOX|1|2a|U|1136
5DOX|1|2a|C|1137
5DOX|1|2a|G|1138
5DOX|1|2a|G|1139
5DOX|1|2a|C|1140

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains