HL_5DOX_222

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5DOX|1|2A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOX_222 not in the Motif Atlas

Homologous match to HL_9DFE_059

Geometric discrepancy: 0.1418

The information below is about HL_9DFE_059

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5DOX|1|2A|U|2528
5DOX|1|2A|G|2529
5DOX|1|2A|A|2530
5DOX|1|2A|A|2531
5DOX|1|2A|G|2532
5DOX|1|2A|A|2533
5DOX|1|2A|A|2534
5DOX|1|2A|G|2535

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6