HL_5DOY_125

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5DOY|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOY_125 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0728

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5DOY|1|2A|G|382
5DOY|1|2A|U|383
5DOY|1|2A|U|384
5DOY|1|2A|C|385
5DOY|1|2A|G|386
5DOY|1|2A|U|387
5DOY|1|2A|G|388
5DOY|1|2A|G|389
5DOY|1|2A|A|390
5DOY|1|2A|G|391
5DOY|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S Ribosomal Protein L28

Chain 2P

50S Ribosomal Protein L15