HL_5DOY_172
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUCCACAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DOY_172 not in the Motif Atlas
- Homologous match to HL_5J7L_193
- Geometric discrepancy: 0.1361
- The information below is about HL_5J7L_193
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_32735.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5DOY|1|2A|C|2471
5DOY|1|2A|G|2472
5DOY|1|2A|U|2473
5DOY|1|2A|C|2474
5DOY|1|2A|C|2475
5DOY|1|2A|A|2476
5DOY|1|2A|C|2477
5DOY|1|2A|A|2478
5DOY|1|2A|G|2479
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 29
- 50S Ribosomal Protein L36
- Chain 2H
- 50S Ribosomal Protein L6
- Chain 2Q
- 50S Ribosomal Protein L16
- Chain 2w
- Transfer RNA; tRNA
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