HL_5DOY_191

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOY_191 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0932

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5DOY|1|2a|C|320
5DOY|1|2a|A|321
5DOY|1|2a|C|322
5DOY|1|2a|U|323
5DOY|1|2a|G|324
5DOY|1|2a|A|325
5DOY|1|2a|G|326
5DOY|1|2a|A|327
5DOY|1|2a|C|328
5DOY|1|2a|A|329
5DOY|1|2a|C|330
5DOY|1|2a|G|331
5DOY|1|2a|G|332
5DOY|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S Ribosomal Protein S16

Chain 2t

30S Ribosomal Protein S20