HL_5E08_001

3D structure

PDB id

5E08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific Recognition of a Single-stranded RNA Sequence by an Engineered Synthetic Antibody Fragment

Experimental method

X-RAY DIFFRACTION

Resolution

2.38 Å

Loop

Sequence

CAUAGG

Length

6 nucleotides

Bulged bases

5E08|1|N|U|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40039.1

Basepair signature

cWW

Number of instances in this motif group

6

Unit IDs

5E08|1|N|C|6
5E08|1|N|A|7
5E08|1|N|U|8
5E08|1|N|A|9
5E08|1|N|G|10
5E08|1|N|G|11

Current chains

Chain N

RNA

Nearby chains

Chain H

Fab Heavy Chain