HL_5E7K_025

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

5E7K|1|13|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E7K_025 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.3407

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5E7K|1|13|G|1134
5E7K|1|13|U|1135
5E7K|1|13|U|1136
5E7K|1|13|C|1137
5E7K|1|13|G|1138
5E7K|1|13|G|1139
5E7K|1|13|C|1140

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 8E

30S ribosomal protein S9