HL_5E7K_028

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E7K_028 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1046

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5E7K|1|13|C|1314
5E7K|1|13|U|1315
5E7K|1|13|G|1316
5E7K|1|13|C|1317
5E7K|1|13|A|1318
5E7K|1|13|A|1319
5E7K|1|13|C|1320
5E7K|1|13|C|1321
5E7K|1|13|C|1322
5E7K|1|13|G|1323

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 4I

30S ribosomal protein S13

Chain 5I

30S ribosomal protein S14 type Z

Chain AI

30S ribosomal protein S19