3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAAACAUC
Length
8 nucleotides
Bulged bases
5E7K|1|14|A|196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5E7K_037 not in the Motif Atlas
Geometric match to HL_5J7L_139
Geometric discrepancy: 0.0995
The information below is about HL_5J7L_139
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_30068.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

5E7K|1|14|G|194
5E7K|1|14|A|195
5E7K|1|14|A|196
5E7K|1|14|A|197
5E7K|1|14|C|198
5E7K|1|14|A|199
5E7K|1|14|U|200
5E7K|1|14|C|201

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 35
50S ribosomal protein L15
Chain F5
50S ribosomal protein L28

Coloring options:


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