HL_5E7K_071

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5E7K|1|14|A|1614, 5E7K|1|14|A|1616, 5E7K|1|14|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E7K_071 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0937

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5E7K|1|14|C|1612
5E7K|1|14|G|1613
5E7K|1|14|A|1614
5E7K|1|14|C|1615
5E7K|1|14|A|1616
5E7K|1|14|C|1617
5E7K|1|14|A|1618
5E7K|1|14|G|1619

Current chains

Chain 14

23S rRNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain L5

50S ribosomal protein L34