HL_5E7K_108

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E7K_108 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0853

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5E7K|1|1G|C|320
5E7K|1|1G|A|321
5E7K|1|1G|C|322
5E7K|1|1G|U|323
5E7K|1|1G|G|324
5E7K|1|1G|A|325
5E7K|1|1G|G|326
5E7K|1|1G|A|327
5E7K|1|1G|C|328
5E7K|1|1G|A|329
5E7K|1|1G|C|330
5E7K|1|1G|G|331
5E7K|1|1G|G|332
5E7K|1|1G|G|333

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain BA

30S ribosomal protein S20