HL_5E7K_131

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E7K_131 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.0945

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5E7K|1|1G|C|1515
5E7K|1|1G|G|1516
5E7K|1|1G|G|1517
5E7K|1|1G|A|1518
5E7K|1|1G|A|1519
5E7K|1|1G|G|1520

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA