HL_5E7K_140

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

5E7K|1|1H|U|270|||L, 5E7K|1|1H|U|270|||M, 5E7K|1|1H|U|270|||O

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E7K_140 not in the Motif Atlas

Homologous match to HL_4WF9_009

Geometric discrepancy: 0.5603

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5E7K|1|1H|G|270|||J
5E7K|1|1H|C|270|||K
5E7K|1|1H|U|270|||L
5E7K|1|1H|U|270|||M
5E7K|1|1H|G|270|||N
5E7K|1|1H|U|270|||O
5E7K|1|1H|C|270|||P

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28