3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGACGGAAAUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5E7K_187 not in the Motif Atlas
Homologous match to HL_7RQB_055
Geometric discrepancy: 0.3387
The information below is about HL_7RQB_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11805.3
Basepair signature
cWW-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

5E7K|1|1H|G|2303
5E7K|1|1H|G|2304
5E7K|1|1H|A|2305
5E7K|1|1H|C|2306
5E7K|1|1H|G|2307
5E7K|1|1H|G|2308
5E7K|1|1H|A|2309
5E7K|1|1H|A|2310
5E7K|1|1H|A|2311
5E7K|1|1H|U|2312
5E7K|1|1H|C|2313

Current chains

Chain 1H
23S rRNA

Nearby chains

Chain 41
50S ribosomal protein L5

Coloring options:


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