3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGCAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5E7K_188 not in the Motif Atlas
Homologous match to HL_7RQB_056
Geometric discrepancy: 0.0996
The information below is about HL_7RQB_056
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_12078.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
31

Unit IDs

5E7K|1|1H|C|2324
5E7K|1|1H|G|2325
5E7K|1|1H|C|2326
5E7K|1|1H|A|2327
5E7K|1|1H|A|2328
5E7K|1|1H|G|2329
5E7K|1|1H|G|2330
5E7K|1|1H|G|2331

Current chains

Chain 1H
23S rRNA

Nearby chains

Chain 2K
Transfer RNA; tRNA
Chain 41
50S ribosomal protein L5
Chain 88
50S ribosomal protein L16
Chain I8
50S ribosomal protein L27

Coloring options:


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