HL_5E81_169

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5E81|1|1H|U|1396, 5E81|1|1H|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_169 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0676

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5E81|1|1H|G|1389
5E81|1|1H|U|1390
5E81|1|1H|U|1391
5E81|1|1H|A|1392
5E81|1|1H|A|1393
5E81|1|1H|U|1394
5E81|1|1H|A|1395
5E81|1|1H|U|1396
5E81|1|1H|U|1397
5E81|1|1H|C|1398

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23