HL_5E81_193

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5E81|1|1H|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_193 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0647

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5E81|1|1H|C|2404
5E81|1|1H|G|2405
5E81|1|1H|U|2406
5E81|1|1H|G|2407
5E81|1|1H|U|2408
5E81|1|1H|G|2409
5E81|1|1H|G|2410
5E81|1|1H|A|2411
5E81|1|1H|A|2412
5E81|1|1H|G|2413

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain J8

50S ribosomal protein L28